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=== Academic === Historians of science today have moved away from a conflict model, which is based mainly on two historical episodes (those involving Galileo and Darwin) in favor of a "complexity" model, because religious figures took positions on both sides of each dispute and there was no overall aim by any party involved in discrediting religion. Biologist Stephen Jay Gould said: "White's and Draper's accounts of the actual interaction between science and religion in Western history do not differ greatly. Both tell a tale of bright progress continually sparked by science. And both develop and use the same myths to support their narrative, the flat-earth legend prominently among them". In a summary of the historiography of the conflict thesis, Colin A. Russell, the former President of Christians in Science, said that "Draper takes such liberty with history, perpetuating legends as fact that he is rightly avoided today in serious historical study. The same is nearly as true of White, though his prominent apparatus of prolific footnotes may create a misleading impression of meticulous scholarship". In Science & Religion, Gary Ferngren proposes a complex relationship between religion and science:

While some historians had always regarded the Draper-White thesis as oversimplifying and distorting a complex relationship, in the late twentieth century it underwent a more systematic reevaluation. The result is the growing recognition among historians of science that the relationship of religion and science has been much more positive than is sometimes thought. Although popular images of controversy continue to exemplify the supposed hostility of Christianity to new scientific theories, studies have shown that Christianity has often nurtured and encouraged scientific endeavour, while at other times the two have co-existed without either tension or attempts at harmonization. If Galileo and the Scopes trial come to mind as examples of conflict, they were the exceptions rather than the rule. A few modern historians of science (such as Peter Barker, Bernard R. Goldstein, and Crosbie Smith) proposed that scientific discoveries such as Kepler's laws of planetary motion in the 17th century, and the reformulation of physics in terms of energy, in the 19th century were driven by religion. Religious organizations and clerics figure prominently in the broad histories of science, until the professionalization of the scientific enterprise, in the 19th century, led to tensions between scholars taking religious and secular approaches to nature. Even the prominent examples of religion's apparent conflict with science, the Galileo affair (1614) and the Scopes trial (1925), were not pure instances of conflict between science and religion, but included personal and political facts in the development of each conflict.

==== Galileo affair ====

The Galileo affair was a sequence of events that begin around 1610, culminating with the trial and house arrest of Galileo Galilei by the Roman Catholic Inquisition in 1633 for his support of heliocentrism. In 1610, Galileo published his Sidereus Nuncius (Starry Messenger), describing the surprising observations that he had made with the new telescope, namely the phases of Venus and the Galilean moons of Jupiter. With these observations he promoted the heliocentric theory of Nicolaus Copernicus (published in De revolutionibus orbium coelestium in 1543). Galileo's initial discoveries were met with opposition within the Catholic Church, and in 1616, the Inquisition declared heliocentrism to be formally heretical. Heliocentric books were banned and Galileo was ordered to refrain from holding, teaching or defending heliocentric ideas. Part of the verdict on Galileo read "[Heliocentrism] is foolish and absurd in philosophy, and formally heretical since it explicitly contradicts in many places the sense of Holy Scripture". Nonetheless, historians note that Galileo never did observe the earth's motion and lacked empirical proof at the time; and that he was placed under house arrest, not imprisoned by the Inquisition. The affair is an example commonly used by advocates of the conflict thesis. Maurice Finocchiaro writes that the affair epitomizes the common view of "the conflict between enlightened science and obscurantist religion," and that this view promotes "the myth that alleges the incompatibility between science and religion." Finocchiaro writes, "I believe that such a thesis is erroneous, misleading, and simplistic," and refers to John Draper, Andrew White, Voltaire, Einstein, Bertrand Russell, and Karl Popper as writers or icons who have promoted it. Finocchiaro notes that the situation was complex and objections to the Copernican system included arguments that were philosophical and scientific, as well as theological. Pope Urban VIII had been an admirer and supporter of Galileo, and there is evidence he did not believe the Inquisition's declaration rendered heliocentrism a heresy. Urban may have rather viewed heliocentrism as a potentially dangerous or rash doctrine that nevertheless had utility in astronomical calculations. In 1632, Galileo published his Dialogue Concerning the Two Chief World Systems, which implicitly defended heliocentrism, and was popular. Pope Urban VIII had asked that his own views on the matter be included in Galileo's book, and were voiced by a character named "Simplicio", who was a simpleton. This angered the Pope and weakened Galileo's position politically. Responding to mounting controversy over theology, astronomy and philosophy, the Roman Inquisition tried Galileo in 1633 and found him "vehemently suspect of heresy", sentencing him to house arrest. Galileo's Dialogue was banned and he was ordered to "abjure, curse and detest" heliocentric ideas. Galileo was kept under house arrest until his death in 1642.

==== Index Librorum Prohibitorum ====