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| title | chunk | source | category | tags | date_saved | instance |
|---|---|---|---|---|---|---|
| Omics | 1/2 | https://en.wikipedia.org/wiki/Omics | reference | science, encyclopedia | 2026-05-05T07:36:51.894950+00:00 | kb-cron |
Omics is the collective characterization and quantification of entire sets of biological molecules and the investigation of how they translate into the structure, function, and dynamics of an organism or group of organisms. The branches of science known informally as omics are various disciplines in biology whose names end in the suffix -omics, such as genomics, proteomics, metabolomics, metagenomics, phenomics and transcriptomics. The related suffix -ome is used to address the objects of study of such fields, such as the genome, proteome or metabolome respectively. The suffix -ome as used in molecular biology refers to a totality of some sort; it is an example of a "neo-suffix" formed by abstraction from various Greek terms in -ωμα, a sequence that does not form an identifiable suffix in Greek. Functional genomics aims at identifying the functions of as many genes as possible of a given organism. It combines different -omics techniques such as transcriptomics and proteomics with saturated mutant collections.
== Origin ==
The Oxford English Dictionary (OED) distinguishes three different fields of application for the -ome suffix:
in medicine, forming nouns with the sense "swelling, tumour" in botany or zoology, forming nouns in the sense "a part of an animal or plant with a specified structure" in cellular and molecular biology, forming nouns with the sense "all constituents considered collectively" The -ome suffix originated as a variant of -oma, and became productive in the last quarter of the 19th century. It originally appeared in terms like sclerome or rhizome. All of these terms derive from Greek words in -ωμα, a sequence that is not a single suffix, but analyzable as -ω-μα, the -ω- belonging to the word stem (usually a verb) and the -μα being a genuine Greek suffix forming abstract nouns. The OED suggests that its third definition originated as a back-formation from mitome, Early attestations include biome (1916) and genome (first coined as German Genom in 1920). The association with chromosome in molecular biology is by false etymology. The word chromosome derives from the Greek stems χρωμ(ατ)- "colour" and σωμ(ατ)- "body". While σωμα "body" genuinely contains the -μα suffix, the preceding -ω- is not a stem-forming suffix but part of the word's root. Because genome refers to the complete genetic makeup of an organism, a neo-suffix -ome suggested itself as referring to "wholeness" or "completion". Bioinformaticians and molecular biologists figured amongst the first scientists to apply the "-ome" suffix widely. Early advocates included bioinformaticians in Cambridge, UK, where there were many early bioinformatics labs such as the MRC centre, Sanger centre, and EBI (European Bioinformatics Institute); for example, the MRC centre carried out the first genome and proteome projects.
== Current usage == Many "omes" beyond the original "genome" have become useful and have been widely adopted by research scientists. "Proteomics" has become well-established as a term for studying proteins at a large scale. "Omes" can provide an easy shorthand to encapsulate a field; for example, an interactomics study is clearly recognisable as relating to large-scale analyses of gene-gene, protein-protein, or protein-ligand interactions. Researchers are rapidly taking up omes and omics, as shown by the explosion of the use of these terms in PubMed since the mid-1990s.
== Kinds of omics studies ==
=== Genomics === Genomics: Study of the genomes of organisms. Cognitive genomics: Study of the changes in cognitive processes associated with genetic profiles. Comparative genomics: Study of the relationship of genome structure and function across different biological species or strains. Functional genomics: Describes gene and protein functions and interactions (often uses transcriptomics). Metagenomics: Study of metagenomes, i.e., genetic material recovered directly from environmental samples. Neurogenomics: Study of genetic influences on the development and function of the nervous system. Pangenomics: Study of the entire collection of genes or genomes found within a given species. Personal genomics: Branch of genomics concerned with the sequencing and analysis of the genome of an individual. Once the genotypes are known, the individual's genotype can be compared with the published literature to determine likelihood of trait expression and disease risk. Helps in Personalized Medicine Electromics: Branch of genomics concerned with the role of exogenous electric fields in potentiating the gene expression profiles of cells, tissues, and organoids.
=== Epigenomics === The epigenome is the supporting structure of the genome, including protein and RNA binders, alternative DNA structures, and chemical modifications on DNA.
Epigenomics: Modern technologies include chromosome conformation by Hi-C, various ChIP-seq and other sequencing methods combined with proteomic fractionations, and sequencing methods that find chemical modification of cytosines, like bisulfite sequencing. Nucleomics: Study of the complete set of genomic components which form "the cell nucleus as a complex, dynamic biological system, referred to as the nucleome". The 4D Nucleome Consortium officially joined the IHEC (International Human Epigenome Consortium) in 2017.
=== Microbiomics === The microbiome is a microbial community occupying a well-defined habitat with distinct physio-chemical properties. It includes the microorganisms involved and their theatre of activity, forming ecological niches. Microbiomes form dynamic and interactive micro-ecosystems prone to spaciotemporal change. They are integrated into macro-ecosystems, such as eukaryotic hosts, and are crucial to the host's proper function and health. The interactive host-microbe systems make up the holobiont. Microbiomics is the study of microbiome dynamics, function, and structure. This area of study employs several techniques to study the microbiome in its host environment: