Scrape wikipedia-science: 56 new, 844 updated, 928 total (kb-cron)

data/en.wikipedia.org/wiki/AllTrials-0.md

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data/en.wikipedia.org/wiki/AllTrials-1.md

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data/en.wikipedia.org/wiki/Allen_Institute_for_Brain_Science-0.md

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+---
+title: "Allen Institute for Brain Science"
+chunk: 1/2
+source: "https://en.wikipedia.org/wiki/Allen_Institute_for_Brain_Science"
+category: "reference"
+tags: "science, encyclopedia"
+date_saved: "2026-05-05T03:48:31.360974+00:00"
+instance: "kb-cron"
+---
+
+The Allen Institute for Brain Science is a division of the Allen Institute, based in Seattle, Washington, that focuses on bioscience research. Founded in 2003, it is dedicated to accelerating the understanding of how the human brain works. With the intent of catalyzing brain research in different areas, the Allen Institute provides free data and tools to scientists.
+Started with $100 million in seed money from Microsoft co-founder and philanthropist Paul Allen in 2003, the institute tackles projects at the leading edge of science—far-reaching projects at the intersection of biology and technology. The resulting data create free, publicly available resources that fuel discovery for countless researchers. Hongkui Zeng is the current director of the institute.
+
+== History and funding ==
+The Allen Institute for Brain Science is a scientific division of the Allen Institute, a nonprofit research organization that also includes the Allen Institute for Cell Science, launched in 2014. The Paul G. Allen Frontiers Group was launched in 2016 while the Allen Institute for Immunology was launched in 2018. All four divisions of the Allen Institute are housed in the same building in Seattle's South Lake Union neighborhood. The institute employs a business model that combines the operational agility and accountability of a for-profit enterprise with the founding vision to take on ambitious projects in neuroscience.
+In 2012, the institute received an additional pledge of $300 million from Paul Allen, bringing his total commitment to $500 million.
+
+== Online public resources ==
+The Allen Institute for Brain Science provides researchers and educators with a variety of unique online public resources for exploring the nervous system. Integrating extensive gene expression data and neuroanatomy, along with data search and viewing tools, these resources are openly accessible via the Allen Brain Atlas data portal.
+
+=== Allen Mouse Brain Atlas ===
+The inaugural project of the Allen Institute was announced on September 26, 2006. Named the Allen Brain Atlas, it was a web-based, three-dimensional map of gene expression in the mouse brain detailing more than 21,000 genes at the cellular level. Since the project's launch, it has been renamed the Allen Mouse Brain Atlas to distinguish it from subsequent atlas projects.
+
+=== Allen Spinal Cord Atlas ===
+On July 17, 2008, the Allen Institute for Brain Science launched the online Allen Spinal Cord Atlas. The spinal cord atlas is an interactive, genome-wide map showing where each gene is expressed, or "turned on", throughout the mouse spinal cord. It is set up like the Allen Institute's earlier atlas of the adult mouse brain. The map could help reveal new treatments for human neurological disorders. The map points researchers toward places where genes are active.
+The Allen Spinal Cord Atlas led to the discovery of a new class of cells in the spinal cord that behave like stem cells, according to researchers at the University of British Columbia. Jane Roskams, the neuroscientist who led the study, said that, "By using the Allen Spinal Cord Atlas, we were able to discover a brand new cell type that has previously been overlooked and that could be an important player in all manner of spinal cord injury and disease, including multiple sclerosis and ALS."
+
+=== Allen Developing Mouse Brain Atlas ===
+On November 14, 2008, the Allen Institute for Brain Science announced the launch of the Allen Developing Mouse Brain Atlas, providing a highly detailed map of gene activity in the mouse brain at several time points across development, including four embryonic ages, three postnatal, and aging time points. The in situ hybridization data is accompanied by a set of reference atlases drawn by neuroanatomist Luis Puelles.
+
+=== Allen Human Brain Atlas ===
+On May 24, 2010, the Allen Institute announced it was expanding its tools from the mouse into the human brain with the launch of the Allen Human Brain Atlas.  This highly comprehensive atlas integrates several kinds of data, including data collected by magnetic resonance imaging (MRI), diffusion tensor technology (DTI), as well as histology and gene expression data derived from both microarray and in situ hybridization (ISH) approaches. The Allen Human Brain Atlas allows researchers to see where a gene is turned on. "The location of where these genes are active is at the very center of understanding how brain diseases work", neurologist Jeffrey L. Noebels told The Wall Street Journal in April 2011. The Allen Human Brain Atlas was profiled in the journal Nature on September 19, 2012.
+
+=== Allen Mouse Brain Connectivity Atlas ===
+The Allen Mouse Brain Connectivity Atlas was launched online on November 3, 2011, and moved the Allen Institute's mapping efforts beyond its historical focus on gene expression toward neural circuitry. The atlas is a three-dimensional, high-resolution map of neural connections throughout the mouse brain, designed to help scientists understand how the brain is wired, offering new insights into how the brain works and what goes awry in brain diseases and disorders.
+
+=== Allen Cell Types Database ===
+Launched in 2015, the Allen Cell Types Database is a new tool to help scientists understand the building blocks of the brain and a major step toward creating a comprehensive map of the brain. The database will help create a common language for researchers around the world to use in observing, measuring and ultimately sorting cells into types much like the periodic table sorts elements. The first release of data includes information on more than 240 cells in the mouse brain. In 2017, the Allen Institute added data from human brain cells to the database.

data/en.wikipedia.org/wiki/Allen_Institute_for_Brain_Science-1.md

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+---
+title: "Allen Institute for Brain Science"
+chunk: 2/2
+source: "https://en.wikipedia.org/wiki/Allen_Institute_for_Brain_Science"
+category: "reference"
+tags: "science, encyclopedia"
+date_saved: "2026-05-05T03:48:31.360974+00:00"
+instance: "kb-cron"
+---
+
+=== Allen Brain Observatory ===
+The Allen Brain Observatory was launched in 2016 to capture cellular-level activity of neurons in the mouse visual cortex. Experiments through the observatory use visual or electrical readouts of neural activity as animals see visual stimuli, ranging from natural images to black and white grid lines to a clip from the Orson Welles film noir, Touch of Evil. In 2018, the institute opened the observatory for research projects proposed by scientists from the broader community through a program called OpenScope, which was modeled after large-scale shared physics observatories such as the Hubble Space Telescope.
+
+=== Other online resources ===
+In addition to the atlas resources, the Allen Institute has generated several other online research tools, including: 
+
+The Ivy Glioblastoma Atlas Project (Ivy GAP), a platform for exploring the anatomic and genetic basis of glioblastoma at the cellular and molecular levels.
+The BrainSpan Atlas of the Developing Human Brain, a resource for studying human brain development developed by a consortium of scientific partners and funded by awards from the National Institutes of Health.
+
+== Awards ==
+Forbes – 30 Under 30 Rising Stars Transforming Science and Health to Allen Institute scientist Adrian Cheng (2012)
+Cajal Club – Krieg Lifetime Achievement Award to Paul Allen for extraordinary contributions in neuroscience through his work with the Allen Institute (2010)
+American Academy of Neurology – Public Leadership in Neurology Award to Paul Allen for his strong commitment to brain research and work with the Allen Institute (2009)
+Time – "Top 100 Most Influential People in the World" to Paul Allen for his successful achievements at the Allen Institute (2007, 2008)
+Time – "Top Ten Medical Breakthroughs" (2006)
+Wired – Rave Award to Paul Allen and the Allen Institute for the completion of the Allen Mouse Brain Atlas (2007)
+Society for Neuroscience – Special Recognition Award to Paul Allen for his generous contributions to neuroscience through his work with the Allen Institute (2007)
+USA Weekend – "Top 10 Medical Breakthroughs of the Year" for the Allen Mouse Brain Atlas (2006)
+
+== References ==
+
+== External links ==
+
+Official website
+Allen Brain Map
+"Scientists Map the Brain, Gene by Gene". Wired. Health. March 28, 2009.

data/en.wikipedia.org/wiki/Amsterdam_Call_for_Action_on_Open_Science-0.md

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+title: "Amsterdam Call for Action on Open Science"
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+source: "https://en.wikipedia.org/wiki/Amsterdam_Call_for_Action_on_Open_Science"
+category: "reference"
+tags: "science, encyclopedia"
+date_saved: "2026-05-05T03:48:33.684910+00:00"
+instance: "kb-cron"
+---
+
+The Amsterdam Call for Action on Open Science is a document that advocates for "full open access for all scientific publications", and endorses an environment where "data sharing and stewardship is the default approach for all publicly funded research".
+
+
+== History ==
+The Amsterdam Call for Action on Open Science was first produced as a draft at an Open Science meeting that was organized by the Dutch Presidency of the Council of the European Union on April 4 and 5, 2016, in Amsterdam. The draft presented to meeting participants in the morning of the 5th had twelve actions. These were commented on by participants, split up in various parallel sessions, and refined during the afternoon. The edits were not completed during the meeting and unlike the meeting schedule suggested, the Call text was not released on the 5th. Nevertheless, the draft was symbolically presented to Sander Dekker and the Dutch Presidency. On April 6, the updated version was released for public commenting on a wiki. In a mail which participants received it was stated that comments could be placed until 14 April.
+The finalised Call for Action was input to the Competitiveness Council on 27 May, led by the Dutch State Secretary for Education, Culture and Science Sander Dekker. In the main results of this meeting a reference was made to the Call for Action in the document called "Outcome of the Council Meeting". It was also referred to in the Draft Council conclusions on the transition towards an Open Science system, point 3 under the section on Open Science. In the press comments on the meeting of the Competitiveness Council, the focus was mainly on the fact that European leaders call for ‘immediate’ open access to all scientific papers by 2020.
+
+
+== See also ==
+Open access in the Netherlands
+
+
+== References ==
+
+
+== Further reading ==
+Kelly, Éanna (5 April 2016). "Moedas: journal papers based on EU-funded science should be free to access". sciencebusiness.net. Archived from the original on 10 April 2016.
+Enserink, Martin (14 April 2016). "E.U. urged to free all scientific papers by 2020". ScienceInsider. AAAS.
+Zaken, Ministerie van Buitenlandse (17 August 2016). "Presentations conference Open Science 4 April". english.eu2016.nl. Archived from the original on 7 April 2016. Retrieved 8 April 2016.
+Press releases and official statements
+Ministry of Education, Culture and Science - the Netherlands (4 April 2016). "Amsterdam Call for Open Science". government.nl.
+European Council (6 April 2016). "EU action plan for Open Science - New Europe". New Europe (Press release).
+McKay, Matt (8 April 2016). "STM response to Call for Action on Open Science" (PDF). stm-assoc.org (Press release). International Association of STM Publishers.
+Mabe, Michael (14 April 2016). "Extended feedback on draft Amsterdam Call for Action" (PDF). stm-assoc.org (Press release). International Association of STM Publishers.
+"Dutch Presidency issues Amsterdam Call for Action on Open Science" (Press release). European University Association. 14 April 2016. Archived from the original on 13 May 2016.
+"LIBER Response to the Amsterdam Call for Action" (Official Statement). LIBER. 15 May 2016. Archived from the original on 17 June 2016. Retrieved 17 May 2016.
+Blog posts
+Hoyt, Jason (6 April 2016). "Debrief - Amsterdam Call for Action on Open Science" (Blog). PeerJ.
+Allen, Liz (13 April 2016). "Widening the piste of research incentives: the opportunities of open science" (Blog). F100 research.
+Scholz, Willi; Tochtermann, Klaus (12 April 2016). "From Vision to Action? The Amsterdam Call for Action on Open Science". ZBW MediaTalk (Blog). German National Library of Economics.
+Foreign language
+Van Calmthout, Martijn (5 April 2016). "EU wil dat onderzoekers gegevens meer gaan delen in eigen datacloud". De Volkskrant (in Dutch).
+"Heel Europa gaat aan de open access | advalvas". www.advalvas.vu.nl (in Dutch).
+"Science in Transition draagt bij aan Amsterdam Call for Action on Open Science" (in Dutch). Science in Transition. 6 April 2016.
+"Europees actieplan voor aanpak open wetenschap". www.nationaleonderwijsgids.nl (in Dutch).
+
+
+== External links ==
+Amsterdam Call for Action on Open Science

data/en.wikipedia.org/wiki/ArXiv-0.md

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+title: "ArXiv"
+chunk: 1/2
+source: "https://en.wikipedia.org/wiki/ArXiv"
+category: "reference"
+tags: "science, encyclopedia"
+date_saved: "2026-05-05T03:48:34.832856+00:00"
+instance: "kb-cron"
+---
+
+arXiv (pronounced as "archive"—the X represents the Greek letter chi ⟨χ⟩) is an open-access repository of electronic preprints and postprints (known as e-prints) approved for posting after moderation, but not peer reviewed. It consists of scientific papers in the fields of mathematics, physics, astronomy, electrical engineering, computer science, quantitative biology, statistics, mathematical finance, and economics, which can be accessed online. In many fields of mathematics and physics, almost all scientific papers are self-archived on the arXiv repository before publication in a peer-reviewed journal. Some publishers also grant permission for authors to archive the peer-reviewed postprint. Begun on August 14, 1991, arxiv.org passed the half-million-article milestone on October 3, 2008. By the end of 2014, it had surpassed one million articles, and it reached two million by the end of 2021. As of November 2024, the submission rate is about 24,000 articles per month.
+
+== History ==
+
+arXiv was made possible by the compact TeX file format, which allowed scientific papers to be easily transmitted over the Internet and rendered client-side. Around 1990, Joanne Cohn began emailing physics preprints to colleagues as TeX files, but the number of papers being sent soon filled mailboxes to capacity. Paul Ginsparg recognized the need for central storage, and in August 1991 he created a central repository mailbox stored at the Los Alamos National Laboratory (LANL) that could be accessed from any computer. Additional modes of access were soon added: FTP in 1991, Gopher in 1992, and the World Wide Web in 1993. The term e-print was quickly adopted to describe the articles.
+It began as a physics archive, called the LANL preprint archive, but soon expanded to include astronomy, mathematics, computer science, quantitative biology and, most recently, statistics. Its original domain name was xxx.lanl.gov. Due to LANL's lack of interest in the rapidly expanding technology, in 2001 Ginsparg changed institutions to Cornell University and changed the name of the repository to arxiv.org.
+Ginsparg brainstormed the new name with his wife; the domain "archive" was already claimed, so "chi" was replaced with "X" standing in as the Greek letter chi and the "e" dropped for symmetry around the "X".
+arXiv was an early adopter and promoter of preprints. Its success in sharing preprints was one of the precipitating factors that led to the later movement in scientific publishing known as open access. Mathematicians and scientists regularly upload their papers to arxiv.org for worldwide access and sometimes for reviews before they are published in peer-reviewed journals. Ginsparg was awarded a MacArthur Fellowship in 2002 for his establishment of arXiv. The annual budget for arXiv was approximately $826,000 for 2013 to 2017, funded jointly by Cornell University Library, the Simons Foundation (in both gift and challenge grant forms) and annual fee income from member institutions. This model arose in 2010, when Cornell sought to broaden the financial funding of the project by asking institutions to make annual voluntary contributions based on the amount of download usage by each institution. Each member institution pledges a five-year funding commitment to support arXiv. Based on institutional usage ranking, the annual fees are set in four tiers from $1,000 to $4,400. Cornell's goal is to raise at least $504,000 per year through membership fees generated by approximately 220 institutions.
+In September 2011, Cornell University Library took overall administrative and financial responsibility for arXiv's operation and development. Ginsparg was quoted in the Chronicle of Higher Education as joking that it "was supposed to be a three-hour tour, not a life sentence". However, Ginsparg remains on the arXiv's Scientific Advisory Board and its Physics Advisory Committee.
+In January 2021, arXiv was declared as one of the “10 computer codes that transformed science” by the Nature journal. In January 2022, arXiv began assigning DOIs to articles, in collaboration with DataCite.
+In March 2026, arXiv announced that it would separate itself from Cornell University and become an independent nonprofit organisation on July 1, 2026. The split was motivated by a desire to diversify and increase arXiv's funding.
+
+== Data format ==
+Each arXiv paper has a "uniquely specific identifier":
+
+YYMM.NNNNN, e.g. 1507.00123,
+YYMM.NNNN, e.g. 0704.0001,
+arch-ive/YYMMNNN for older papers, e.g. hep-th/9901001.
+Different versions of the same paper are specified by a version number at the end. For example, 1709.08980v1. If no version number is specified, the default is the latest version.
+arXiv uses a category system. Each paper is tagged with one or more categories. Some categories have two layers. For example, q-fin.TR is the "Trading and Market Microstructure" category within "quantitative finance". Other categories have one layer. For example, hep-ex is "high energy physics experiments".

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+title: "ArXiv"
+chunk: 2/2
+source: "https://en.wikipedia.org/wiki/ArXiv"
+category: "reference"
+tags: "science, encyclopedia"
+date_saved: "2026-05-05T03:48:34.832856+00:00"
+instance: "kb-cron"
+---
+
+== Moderation process and endorsement ==
+Although arXiv is not peer reviewed, a collection of moderators for each area review the submissions; they may recategorize any that are deemed off-topic, or reject submissions that are not scientific papers, or sometimes for undisclosed reasons. The lists of moderators for many sections of arXiv are publicly available, but moderators for most of the physics sections remain unlisted. In addition to human moderators, all submissions are checked via an automated quality control process, ensuring a baseline standard of professionalism. 
+Additionally, an "endorsement" system was introduced in 2004 as part of an effort to ensure content is relevant and of interest to current research in the specified disciplines. Under the system, for categories that use it, an author must be endorsed by an established arXiv author before being allowed to submit papers to those categories. Endorsers are not asked to review the paper for errors but to check whether the paper is appropriate for the intended subject area. New authors from recognized academic institutions generally receive automatic endorsement, which in practice means that they do not need to deal with the endorsement system at all. However, the endorsement system has attracted criticism for allegedly restricting scientific inquiry.
+A majority of the e-prints are also submitted to journals for publication, but some work, including some very influential papers, remain purely as e-prints and are never published in a peer-reviewed journal. A well-known example of the latter is an outline of a proof of Thurston's geometrization conjecture, including the Poincaré conjecture as a particular case, uploaded by Grigori Perelman in November 2002. Perelman appears content to forgo the traditional peer-reviewed journal process, stating: "If anybody is interested in my way of solving the problem, it's all there [on the arXiv] – let them go and read about it". Despite this non-traditional method of publication, other mathematicians recognized this work by offering the Fields Medal and Clay Mathematics Millennium Prizes to Perelman, both of which he refused.
+While arXiv does contain some dubious e-prints, such as those claiming to refute famous theorems or proving famous conjectures such as Fermat's Last Theorem using only high-school mathematics, a 2002 article which appeared in Notices of the American Mathematical Society described those as "surprisingly rare". arXiv generally re-classifies these works, e.g. in "General mathematics", rather than deleting them; however, some authors have voiced concern over the lack of transparency in the arXiv screening process.
+In November 2025, arXiv announced that it would no longer accept computer science review articles and position papers that had not been vetted by an academic journal or conference due to an increase in AI-generated research. arXiv stated that these sources “were never officially on arXiv’s list of ‘accepted content types’”, and before submitting to arXiv, review articles and position papers should be accepted by a peer-reviewed journal or conference with reference and DOI metadata. However, arXiv does not accept articles from conference workshops, as they do not “meet the same standard of rigor of traditional peer review”.
+
+=== Withdrawn preprints ===
+It has been reported that 14,000 preprints have been withdrawn at arXiv, most commonly due to "crucial errors". A lesser number of the withdrawals were due to the preprint being subsumed by another publication. The report itself was posted at arXiv December, 2024.
+
+== Submission formats ==
+Papers can be submitted in any of several formats, including LaTeX, and PDF printed from a word processor other than TeX or LaTeX. The submission is rejected by the arXiv software if generating the final PDF file fails, if any image file is too large, or if the total size of the submission is too large. arXiv now allows one to store and modify an incomplete submission, and only finalize the submission when ready. The time stamp on the article is set when the submission is finalized.
+
+== Access ==
+
+The standard access route is through the arxiv.org website, which is publicly accessible and does not require an account. Other interfaces and access routes have also been created by other un-associated organisations.
+Metadata for arXiv is made available through OAI-PMH, the standard for open access repositories. Content is therefore indexed in all major consumers of such data, such as BASE, CORE and Unpaywall. As of 2020, the Unpaywall dump links over 500,000 arXiv URLs as the open access version of a work found in CrossRef data from the publishers, making arXiv a top 10 global host of green open access.
+Finally, researchers can select sub-fields and receive daily e-mailings or RSS feeds of all submissions in them.
+
+== Copyright status of files ==
+Files on arXiv can have a number of different copyright statuses:
+
+Some are public domain, in which case they will have a statement saying so.
+Some are available under either the Creative Commons 4.0 Attribution-ShareAlike license or the Creative Commons 4.0 Attribution-Noncommercial-ShareAlike license.
+Some are copyright to the publisher, but the author has the right to distribute them and has given arXiv a non-exclusive irrevocable license to distribute them.
+Most are copyright to the author, and arXiv has only a non-exclusive irrevocable license to distribute them.
+
+== See also ==
+List of preprint repositories
+
+== Citations ==
+
+== General and cited sources ==
+
+== External links ==
+
+Official website

data/en.wikipedia.org/wiki/Berkeley_Initiative_for_Transparency_in_the_Social_Sciences-0.md

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data/en.wikipedia.org/wiki/Bgee-0.md

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+---
+title: "Bgee"
+chunk: 1/1
+source: "https://en.wikipedia.org/wiki/Bgee"
+category: "reference"
+tags: "science, encyclopedia"
+date_saved: "2026-05-05T03:48:37.217309+00:00"
+instance: "kb-cron"
+---
+
+Bgee is a database maintained by the SIB Swiss Institute of Bioinformatics and the University of Lausanne for retrieval and comparison of gene expression patterns from RNA-Seq, scRNA-Seq, Microarray, In situ hybridization and EST studies, across multiple animal species. Bgee provides an intuitive answer to the question where is a gene expressed? and supports research in cancer and agriculture, as well as evolutionary biology.
+Bgee is based exclusively on curated, healthy wild-type, expression data (i.e., no gene knock-out, no treatment, no disease), to provide a comparable reference of healthy wild-type gene expression.
+Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species.
+Bgee allows searches by gene, organ / tissue / cell type and developmental stage.
+Bgee is a part of Global Core Biodata Resources (GCBRs) and ELIXIR Core Data Resources representing "critical components for ensuring the reproducibility and integrity of life sciences research."
+Bgee is also an ELIXIR Recommended Interoperability Resources that facilitate the FAIR-supporting activities in scientific research.
+
+
+== References ==
+
+
+== Further reading ==
+
+
+== External links ==
+"Bgee is a new ELIXIR Recommended Interoperability Resources". ELIXIR. 14 December 2023.
+"Bgee joins the Global Core Biodata Resources". GCB Global Biodata Coalition. 11 December 2023.
+"About Bgee". SIB Swiss Institute of Bioinformatics. 4 January 2021.

data/en.wikipedia.org/wiki/Binder_Project-0.md

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+---
+title: "Binder Project"
+chunk: 1/1
+source: "https://en.wikipedia.org/wiki/Binder_Project"
+category: "reference"
+tags: "science, encyclopedia"
+date_saved: "2026-05-05T03:48:38.365166+00:00"
+instance: "kb-cron"
+---
+
+The Binder Project is a software project to package and share interactive, reproducible environments.  A Binder or "Binder-ready repository" is a code repository that contains both code and content to run, and configuration files for the environment needed to run it. 
+Since 2017, when the Binder Project was merged into the JupyterHub project, the development communities share many people in common.  A common use of Binder is for sharing a Jupyter notebook in a way that the recipient can immediately execute in a browser.  
+The Binder project maintains core libraries and documentation for running Binder services, which make those projects available, as well as BinderHub, a tool for deploying such services via common cloud computing environments.  A public BinderHub portal is hosted by the community at mybinder.org.
+
+
+== BinderHub ==
+A BinderHub lets you launch a publicly executable version of a Binder repository.  Given a URL to a repository, it generates a new URL that anyone can visit in a browser to interact with a running version of the code in that repository.
+The public BinderHub, mybinder.org, load-balances Binder instances across a federation of contributing institutions, each of which is running its own BinderHub instance.
+
+
+== See also ==
+Project Jupyter
+IPython
+RStudio
+
+
+== References ==

data/en.wikipedia.org/wiki/Bioinformatics_Research_Network-0.md

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+---
+title: "Bioinformatics Research Network"
+chunk: 1/1
+source: "https://en.wikipedia.org/wiki/Bioinformatics_Research_Network"
+category: "reference"
+tags: "science, encyclopedia"
+date_saved: "2026-05-05T03:48:39.667934+00:00"
+instance: "kb-cron"
+---
+
+Bioinformatics Research Network (BRN) is a non-profit open-science research-based organization aiming to provide volunteer opportunities and bioinformatics research training that is free and open to everyone. It is a community-driven 501(c)(3) non-profit organization  that aims to establish a worldwide network that is open to anyone interested in bioinformatics irrespective of academic background and to provide bioinformatics training, mentorship and the opportunity to collaborate on exciting research projects.
+
+
+== Training and projects ==
+BRN provides free training workshops through its partner group Bioinformatics Interest Group. BIG is a student club of The University of Texas Health Science Center at San Antonio established to promote the development of student bioinformaticians and encourage the growth of bioinformatics skills in the community. BRN is open to academic labs to host projects for open collaboration. These projects are then available for everyone to contribute. To work on a project, a volunteer has to complete the required skill assessments for the specific project and apply to the respected team. The decision to allow the volunteer to work depends on the team of the respective project.
+
+
+== Publication ==
+BRN has published its projects in BioRxiv and in peer-reviewed journals.
+
+
+== References ==
+
+
+== External links ==
+Official website

data/en.wikipedia.org/wiki/Blue_Obelisk-0.md

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+---
+title: "Blue Obelisk"
+chunk: 1/1
+source: "https://en.wikipedia.org/wiki/Blue_Obelisk"
+category: "reference"
+tags: "science, encyclopedia"
+date_saved: "2026-05-05T03:48:40.823971+00:00"
+instance: "kb-cron"
+---
+
+Blue Obelisk is an informal group of chemists who promote open data, open source, and open standards; it was initiated by Peter Murray-Rust and others in 2005. Multiple open source cheminformatics projects associate themselves with the Blue Obelisk, among which, in alphabetical order, Avogadro, Bioclipse, cclib, Chemistry Development Kit, GaussSum, JChemPaint, JOELib, Kalzium, Openbabel, OpenSMILES, and UsefulChem.
+
+The project has handed out personal awards for achievements in promoting Open Data, Open Source and Open Standards. Among those who received a Blue Obelisk Award are:
+
+Christoph Steinbeck (2006)
+Geoff Hutchinson (2006)
+Bob Hanson (2006),
+Egon Willighagen (2007)
+Jean-Claude Bradley (2007)
+Ola Spjuth (2007)
+Noel O'Boyle (2010)
+Rajarshi Guha (2010)
+Cameron Neylon (2010)
+Alex Wade (2010)
+Nina Jeliazkova (2010)
+Henry Rzepa (2011)
+Dan Zaharevitz (2011)
+Sam Adams (2011)
+Jens Thomas (2011)
+Marcus Hanwell (2011)
+Roger Sayle (2011)
+the Environmental Molecular Sciences Laboratory (2012)
+Saulius Gražulis (2014)
+Antony Williams (2014)
+Daniel Lowe (2014)
+Andrew Lang (2014)
+Matthew H. Todd (2014)
+Greg Landrum (2016)
+Mark Forster (2016)
+John Mayfield (2017)
+
+
+== See also ==
+Cheminformatics
+
+
+== References ==
+
+
+== External links ==
+Official website
+Twitter account

data/en.wikipedia.org/wiki/Jean-Claude_Bradley-0.md

@@ -0,0 +1,24 @@
+---
+title: "Jean-Claude Bradley"
+chunk: 1/1
+source: "https://en.wikipedia.org/wiki/Jean-Claude_Bradley"
+category: "reference"
+tags: "science, encyclopedia"
+date_saved: "2026-05-05T03:48:42.050146+00:00"
+instance: "kb-cron"
+---
+
+Jean-Claude Bradley was a chemist who actively promoted Open Science in chemistry, including at the White House, for which he was awarded the Blue Obelisk award in 2007. He coined the term "Open Notebook science". He died in May 2014. A memorial symposium was held July 14, 2014 at Cambridge University, UK.
+One outcome of his Open Notebook work is the collection of physicochemical properties of organic compounds he was studying. All of this data he made available as Open data under the CCZero license. For example, in 2009 Bradley et al. published their work on making solubility data of organic compounds available as Open data. Later, the melting point data set he collaborated on with Andrew Lang and Antony Williams was published with Figshare. Both data sets were also made available as books via the Lulu.com self-publishing platform.
+He blogged extensively and contributed to at least 25 individual blogs. In an interview in 2008 with Bora Zivkovic titled "Doing Science Publicly", he spoke of his work and online presence. In 2010, he gave an extensive interview about the impact of Open Notebook science with Richard Poynder.
+
+
+== References ==
+
+
+== External links ==
+
+Jean-Claude Bradley's Google Scholar Citations Page
+Jean-Claude Bradley's YouTube Channel
+Jean-Claude Bradley's FriendFeed entries
+In Memoriam JCB Memorial wiki (archived version)